Survival-associated meQTLs across different cancer types
We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| UCEC | rs145923799 | chr16:15495503 | C/G | 1.09E-11 | 173 | 22.57 | 29.8 | 4.33 | KM Plot |
| UCEC | rs145964814 | chr3:48084823 | T/C | 6.44E-6 | 174 | 22.63 | 20.13 | 11.53 | KM Plot |
| UCEC | rs147777662 | chr2:12856134 | CG/C | 1.55E-8 | 167 | 22.38 | 26.52 | 4.5 | KM Plot |
| UCEC | rs147873955 | chr5:77736642 | G/A | 5.51E-5 | 170 | 18.37 | 25.87 | 21.55 | KM Plot |
| UCEC | rs148032295 | chr16:15497269 | C/CCTG | 1.09E-11 | 173 | 22.57 | 29.8 | 4.33 | KM Plot |
| UCEC | rs148327723 | chr3:47968552 | G/C | 6.92E-7 | 172 | 22.63 | 22.25 | 11.53 | KM Plot |
| UCEC | rs148656691 | chr17:27062795 | TTTA/T | 9.44E-9 | 170 | 21.08 | 25.87 | 11.53 | KM Plot |
| UCEC | rs148896191 | chr17:45826407 | GA/G | 3.55E-5 | 172 | 24.07 | 21.03 | 12.2 | KM Plot |
| UCEC | rs149256599 | chr14:73539326 | A/AATCC | 4.68E-7 | 173 | 22.57 | 22.63 | 10.33 | KM Plot |
| UCEC | rs149303716 | chr3:48127618 | G/A | 7.24E-6 | 172 | 22.63 | 22.25 | 11.53 | KM Plot |
| UCEC | rs150086802 | chr14:73498554 | C/T | 4.61E-7 | 174 | 22.57 | 27.05 | 10.33 | KM Plot |
| UCEC | rs150459449 | chr13:49486246 | AT/A | 0 | 167 | 23.57 | 20.17 | 2.4 | KM Plot |
| UCEC | rs150491017 | chr3:48041471 | G/A | 6.44E-6 | 174 | 22.63 | 20.13 | 11.53 | KM Plot |
| UCEC | rs1508887 | chr5:54364891 | C/T | 1.54E-7 | 173 | 21.1 | 27.78 | 20.33 | KM Plot |
| UCEC | rs151126595 | chr11:62118947 | C/T | 1.3E-11 | 172 | 22.57 | 26.9 | 4.33 | KM Plot |